U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    plant/protein (DUF810) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830588, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    plant/protein (DUF810)
    Primary source
    TAIR:AT5G06970
    Locus tag
    AT5G06970
    See related
    Araport:AT5G06970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MOJ9.14; MOJ9_14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    27
    Sequence:
    Chromosome: 5; NC_003076.8 (2157970..2166511, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor family protein Neighboring gene OCS-element binding factor 5 Neighboring gene uncharacterized protein Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene sulfotransferase 2B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Dynamics and environmental responses of PATROL1 in Arabidopsis subsidiary cells. Higaki T, et al. Plant Cell Physiol, 2014 Apr. PMID 24163289
    2. A Munc13-like protein in Arabidopsis mediates H+-ATPase translocation that is essential for stomatal responses. Hashimoto-Sugimoto M, et al. Nat Commun, 2013. PMID 23896897, Free PMC Article
    3. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    4. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PATROL1 may contribute to stomatal movement by translocations of plasma membrane H(+)-ATPase in subsidiary cells.
      Title: Dynamics and environmental responses of PATROL1 in Arabidopsis subsidiary cells.
    2. A Munc13-like protein in Arabidopsis (PATROL1) mediates AHA1 translocation that is essential for stomatal responses. [PATROL1]
      Title: A Munc13-like protein in Arabidopsis mediates H+-ATPase translocation that is essential for stomatal responses.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_120779.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein localization to plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within stomatal movement IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plant/protein (DUF810)
    NP_196314.2
    • CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT4G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2157970..2166511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120779.3 → NP_196314.2  plant/protein (DUF810) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196314.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RX56, Q9FL49
      UniProtKB/TrEMBL
      A0A178UQH9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RX56.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools