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    transmembrane protein, putative (DUF247) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832317, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF247)
    Primary source
    TAIR:AT5G22550
    Locus tag
    AT5G22550
    See related
    Araport:AT5G22550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQJ16.9; MQJ16_9
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (7483863..7485482, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF247)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122160.2
    NM_203092.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF247)
    NP_568420.1
    • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974821.1
    • Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7483863..7485482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122160.2 → NP_568420.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568420.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGD6, F4K9X4
      Conserved Domains (1) summary
      pfam03140
      Location:46 → 424
      DUF247; Plant protein of unknown function

    2. NM_203092.2 → NP_974821.1  transmembrane protein, putative (DUF247) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974821.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGD6, Q9FK84
      Conserved Domains (1) summary
      pfam03140
      Location:46 → 473
      DUF247; Plant protein of unknown function
    Nucleotide Protein
    Heading Accession and Version

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