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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832398, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT5G23340
    Locus tag
    AT5G23340
    See related
    Araport:AT5G23340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MKD15.20; MKD15_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (7856039..7858319)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene S-isoprenylcysteine O-methyltransferase Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene GRAM domain protein/ABA-responsive-like protein Neighboring gene GRAM domain-containing protein / ABA-responsive protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_122240.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_197725.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7856039..7858319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122240.4 → NP_197725.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197725.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UH53, Q9FMW7
      Conserved Domains (3) summary
      cd09293
      Location:85 → 323
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:68 → 99
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam18511
      Location:12 → 48
      F-box_5
    Nucleotide Protein
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