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    DEG9 DegP protease 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834018, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DEG9
    Official Full Name
    DegP protease 9
    Primary source
    TAIR:AT5G40200
    Locus tag
    AT5G40200
    See related
    Araport:AT5G40200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DegP protease 9; DegP9; degradation of periplasmic proteins 9; MSN9.100; MSN9_100
    Summary
    Encodes a putative DegP protease.
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    Genomic context

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    See DEG9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (16070146..16073387)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein Neighboring gene RNA ligase/cyclic nucleotide phosphodiesterase family protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4. Chi W, et al. Proc Natl Acad Sci U S A, 2016 Jun 21. PMID 27274065, Free PMC Article
    2. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    3. The crystal structure of Deg9 reveals a novel octameric-type HtrA protease. Ouyang M, et al. Nat Plants, 2017 Dec. PMID 29180814
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Deg9 structure and proteolytic activity towards ARR4
      Title: The crystal structure of Deg9 reveals a novel octameric-type HtrA protease.
    2. genetic evidence shows that DEG9 acts upstream of ARR4 and regulates the activity of ARR4 in cytokinin and light-signaling pathways
      Title: DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_123384.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type peptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DegP protease 9
    NP_568577.1
    • DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 2 (TAIR:AT2G47940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16070146..16073387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123384.3 → NP_568577.1  DegP protease 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568577.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FL12
      UniProtKB/TrEMBL
      A0A178UDN0, A0A5S9YBX0, A0A654G6M5
      Conserved Domains (2) summary
      COG0265
      Location:100 → 434
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
      pfam17815
      Location:440 → 585
      PDZ_3; PDZ domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FL12.1

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