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    DRB5 dsRNA-binding protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834109, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DRB5
    Official Full Name
    dsRNA-binding protein 5
    Primary source
    TAIR:AT5G41070
    Locus tag
    AT5G41070
    See related
    Araport:AT5G41070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    dsRNA-binding protein 5; MEE6.14; MEE6_14
    Summary
    Encodes a double-stranded RNA binding protein.
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    Genomic context

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    See DRB5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (16438265..16440055)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene DHHC-type zinc finger family protein Neighboring gene uncharacterized protein Neighboring gene PLC-like phosphodiesterases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana. Eamens AL, et al. Plant Signal Behav, 2012 Oct 1. PMID 22902697, Free PMC Article
    2. Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Hiraguri A, et al. Plant Mol Biol, 2005 Jan. PMID 15821876
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_123472.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables double-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    dsRNA-binding protein 5
    NP_198923.2
    • dsRNA-binding protein 5 (DRB5); FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 3 (TAIR:AT3G26932.2); Has 571 Blast hits to 516 proteins in 134 species: Archae - 0; Bacteria - 166; Metazoa - 100; Fungi - 5; Plants - 279; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16438265..16440055
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123472.3 → NP_198923.2  dsRNA-binding protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198923.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GY79, Q9FLM2
      UniProtKB/TrEMBL
      A0A178UCJ6, A0A5S9Y9W7, A0A654G7D6
      Conserved Domains (2) summary
      cd19907
      Location:1 → 69
      DSRM_AtDRB-like_rpt1; first double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
      cd19908
      Location:86 → 154
      DSRM_AtDRB-like_rpt2; second double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GY79.1

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