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    LARP6a RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834667, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LARP6a
    Official Full Name
    RNA-binding protein
    Primary source
    TAIR:AT5G46250
    Locus tag
    AT5G46250
    See related
    Araport:AT5G46250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtLARP6a; La related protein 6a; MPL12.3; MPL12_3
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    Genomic context

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    See LARP6a in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (18755280..18758333)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 1 Neighboring gene ncRNA Neighboring gene disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085252.1
    NM_123994.4
    NM_180810.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein
    NP_001078721.1
    • RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT2G43970.1); Has 1643 Blast hits to 1641 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 943; Fungi - 256; Plants - 299; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).
    NP_568660.3
    • RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT2G43970.1); Has 1510 Blast hits to 1508 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 838; Fungi - 235; Plants - 291; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    NP_851141.1
    • RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 875; Fungi - 249; Plants - 311; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18755280..18758333
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180810.3 → NP_851141.1  RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851141.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MS45, F4KG39, Q94A38, Q9FL36
      UniProtKB/TrEMBL
      A0A654G912
      Conserved Domains (2) summary
      smart00715
      Location:101 → 180
      LA; Domain in the RNA-binding Lupus La protein; unknown function
      cd12288
      Location:193 → 282
      RRM_La_like_plant; RNA recognition motif (RRM) found in plant proteins related to the La autoantigen

    2. NM_001085252.1 → NP_001078721.1  RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078721.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGT6
      Conserved Domains (2) summary
      cd08033
      Location:104 → 180
      LARP_6; La RNA-binding domain of La-related protein 6
      cd12288
      Location:193 → 282
      RRM_La_like_plant; RNA recognition motif in plant proteins related to the La autoantigen

    3. NM_123994.4 → NP_568660.3  RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568660.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGT6
      Conserved Domains (2) summary
      cd08033
      Location:104 → 180
      LARP_6; La RNA-binding domain of La-related protein 6
      cd12288
      Location:193 → 282
      RRM_La_like_plant; RNA recognition motif in plant proteins related to the La autoantigen
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94A38.1

    Gene LinkOut

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