ELP1 EDM2-like protein1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ELP1
Official Full Name: EDM2-like protein1
Primary source: TAIR:AT5G48090
Locus tag: AT5G48090
See related: Araport:AT5G48090
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: EDM2-like protein1; MDN11.17; MDN11_17
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Genomic context

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See ELP1 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 19

Sequence:: Chromosome: 5; NC_003076.8 (19484015..19488657)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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NM_001161296.1

Supported by ESTs:

NM_001344757.1

Supported by ESTs:

NM_124183.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: EDM2-like protein1

NP_001318757.1

EDM2-like protein1 (ELP1); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 359 Blast hits to 339 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

NP_199620.4

EDM2-like protein1 (ELP1); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 373 Blast hits to 351 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

19484015..19488657

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001344757.1 → NP_001318757.1 EDM2-like protein1 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A654G907, Q9FI29

Conserved Domains (3) summary

cd15565
Location:93 → 158

PHD2_NSD; PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins

cl17173
Location:428 → 458

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

cl22851
Location:33 → 87

PHD_SF; PHD finger superfamily
NM_001161296.1 → NP_001154768.1 EDM2-like protein1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154768.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654G907, Q9FI29

Conserved Domains (3) summary

cd15565
Location:93 → 158

PHD2_NSD; PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins

cl17173
Location:428 → 458

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

cl22851
Location:33 → 87

PHD_SF; PHD finger superfamily
NM_124183.4 → NP_199620.4 EDM2-like protein1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_199620.4

Status: REVIEWED

UniProtKB/TrEMBL

A0A654G907, F4K064

Conserved Domains (3) summary

cd15565
Location:134 → 199

PHD2_NSD; PHD finger 2 found in nuclear receptor-binding SET domain-containing (NSD) proteins

cl17173
Location:469 → 499

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

cl22851
Location:74 → 128

PHD_SF; PHD finger superfamily