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    Cyclin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834920, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cyclin family protein
    Primary source
    TAIR:AT5G48630
    Locus tag
    AT5G48630
    See related
    Araport:AT5G48630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K15N18.10; K15N18_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (19721465..19723307, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene myb-like protein X Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene Cyclin family protein Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CycC1;1 negatively modulates ABA signaling by interacting with and inhibiting ABI5 during seed germination. Guo JX, et al. Plant Physiol, 2022 Nov 28. PMID 36173345, Free PMC Article
    2. MACCHI-BOU 2 is required for early embryo patterning and cotyledon organogenesis in Arabidopsis. Ito J, et al. Plant Cell Physiol, 2011 Mar. PMID 21257604
    3. CYCLIN-DEPENDENT KINASE8 differentially regulates plant immunity to fungal pathogens through kinase-dependent and -independent functions in Arabidopsis. Zhu Y, et al. Plant Cell, 2014 Oct. PMID 25281690, Free PMC Article
    4. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203564.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cyclin family protein
    NP_001190493.1
    • Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G48640.1).
    NP_199674.1
    • Cyclin family protein; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G48640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19721465..19723307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124239.4 → NP_199674.1  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199674.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJK7
      UniProtKB/TrEMBL
      A0A178UNZ2, A0A5S9YDB5, A0A654G967
      Conserved Domains (2) summary
      cd20571
      Location:35 → 141
      CYCLIN_AtCycC_rpt1; first cyclin box found in Arabidopsis thaliana C-type cyclins (CycCs) and similar proteins
      cd20572
      Location:146 → 249
      CYCLIN_AtCycC_rpt2; second cyclin box found in Arabidopsis thaliana C-type cyclins (CycCs) and similar proteins

    2. NM_001203564.1 → NP_001190493.1  Cyclin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190493.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UNZ2, F4K359
      Conserved Domains (2) summary
      smart00385
      Location:165 → 232
      CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
      pfam00134
      Location:49 → 145
      Cyclin_N; Cyclin, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJK7.1

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