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    HDG7 homeodomain GLABROUS 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835293, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HDG7
    Official Full Name
    homeodomain GLABROUS 7
    Primary source
    TAIR:AT5G52170
    Locus tag
    AT5G52170
    See related
    Araport:AT5G52170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17P19.7; F17P19_7; homeodomain GLABROUS 7
    Summary
    Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
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    Genomic context

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    See HDG7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (21196602..21202664)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase BIG BROTHER-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene transmembrane protein 161AB protein Neighboring gene Sugar isomerase (SIS) family protein Neighboring gene phosphoprotein phosphatase inhibitor Neighboring gene ncRNA Neighboring gene GTP-binding protein 1 Neighboring gene chromosome transmission fidelity-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Nakamura M, et al. Plant Physiol, 2006 Aug. PMID 16778018, Free PMC Article
    2. AIL and HDG proteins act antagonistically to control cell proliferation. Horstman A, et al. Development, 2015 Feb 1. PMID 25564655
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_positive_effect cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    homeodomain GLABROUS 7
    NP_001318786.1
    • homeodomain GLABROUS 7 (HDG7); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G00730.1); Has 13178 Blast hits to 13134 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 9657; Fungi - 189; Plants - 3110; Viruses - 1; Other Eukaryotes - 221 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21196602..21202664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344987.1 → NP_001332093.1  homeodomain GLABROUS 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG00, A0A5S9YDY7

    2. NM_001344986.1 → NP_001318786.1  homeodomain GLABROUS 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTK3
      UniProtKB/TrEMBL
      A0A5S9YDY7, A0A7G2FIL6
      Conserved Domains (2) summary
      cd08875
      Location:220 → 425
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      pfam00046
      Location:61 → 113
      Homeobox; Homeobox domain

    3. NM_124596.2 → NP_200030.1  homeodomain GLABROUS 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200030.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTK3
      UniProtKB/TrEMBL
      A0A5S9YDY7, A0A7G2FIL6
      Conserved Domains (2) summary
      cd08875
      Location:220 → 425
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      pfam00046
      Location:61 → 113
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTK3.1

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