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    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835725, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
    Primary source
    TAIR:AT5G56260
    Locus tag
    AT5G56260
    See related
    Araport:AT5G56260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24C1.7; K24C1_7
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (22775189..22777355, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hapless protein Neighboring gene hapless 8 Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 2 Neighboring gene COP9 signalosome subunit 6A Neighboring gene peroxin 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345193.1
    NM_125009.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxaloacetate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonuclease inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of RNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
    NP_200437.1
    • Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (TAIR:AT5G16450.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22775189..22777355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345191.1 → NP_001331061.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCQ5

    2. NM_001345190.1 → NP_001331062.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q53XH2, Q9FH13
      UniProtKB/TrEMBL
      A0A178U8P6, A0A5S9YEN4
      Conserved Domains (1) summary
      PRK09372
      Location:4 → 165
      PRK09372; ribonuclease E inhibitor RraA

    3. NM_001345192.1 → NP_001331064.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCQ5

    4. NM_125009.4 → NP_200437.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200437.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q53XH2, Q9FH13
      UniProtKB/TrEMBL
      A0A178U8P6, A0A5S9YEN4
      Conserved Domains (1) summary
      PRK09372
      Location:4 → 165
      PRK09372; ribonuclease E inhibitor RraA

    5. NM_001345193.1 → NP_001331063.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q53XH2, Q9FH13
      UniProtKB/TrEMBL
      A0A178U8P6, A0A5S9YEN4
      Conserved Domains (1) summary
      PRK09372
      Location:4 → 165
      PRK09372; ribonuclease E inhibitor RraA
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FH13.1

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