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    ARP8 actin-related protein 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835717, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARP8
    Official Full Name
    actin-related protein 8
    Primary source
    TAIR:AT5G56180
    Locus tag
    AT5G56180
    See related
    Araport:AT5G56180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    actin-related protein 8; AT5G56185; ATARP8; MDA7.26
    Summary
    encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
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    Genomic context

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    See ARP8 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (22737325..22741100, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme 30 Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene C2H2 type zinc finger transcription factor family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ACTIN-RELATED PROTEIN8 encodes an F-box protein localized to the nucleolus in Arabidopsis. Kandasamy MK, et al. Plant Cell Physiol, 2008 May. PMID 18385164, Free PMC Article
    2. Arabidopsis contains ancient classes of differentially expressed actin-related protein genes. McKinney EC, et al. Plant Physiol, 2002 Mar. PMID 11891255, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These findings provide the first insight into the possible contributions of plant ARP8 to nucleolar functions.
      Title: ACTIN-RELATED PROTEIN8 encodes an F-box protein localized to the nucleolus in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_125000.4
    NM_203211.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cytoskeleton ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament-based process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-related protein 8
    NP_568836.2
    • actin-related protein 8 (ARP8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 10755 Blast hits to 10746 proteins in 2376 species: Archae - 0; Bacteria - 6; Metazoa - 4699; Fungi - 2663; Plants - 1312; Viruses - 0; Other Eukaryotes - 2075 (source: NCBI BLink).
    NP_974940.1
    • actin-related protein 8 (ARP8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 9 (TAIR:AT2G42090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22737325..22741100 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345181.1 → NP_001330467.1  actin-related protein 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAX0
      Conserved Domains (1) summary
      cl17037
      Location:50 → 330
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    2. NM_125000.4 → NP_568836.2  actin-related protein 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568836.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7PCC3, Q84WA6, Q8L8Z7, Q8LKQ9, Q9FKT0
      UniProtKB/TrEMBL
      A0A7G2FGL5
      Conserved Domains (2) summary
      pfam12937
      Location:43 → 83
      F-box-like
      cl17037
      Location:136 → 462
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    3. NM_203211.1 → NP_974940.1  actin-related protein 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974940.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIZ8
      Conserved Domains (2) summary
      pfam12937
      Location:43 → 83
      F-box-like; F-box-like
      cl17037
      Location:182 → 364
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKT0.1

    Gene LinkOut

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