CwfJ-like family protein / zinc finger (CCCH-type) family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: CwfJ-like family protein / zinc finger (CCCH-type) family protein
Primary source: TAIR:AT5G56900
Locus tag: AT5G56900
See related: Araport:AT5G56900
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: MHM17.1; MHM17_1
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 11

Sequence:: Chromosome: 5; NC_003076.8 (23019245..23022765, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001345224.1

Supported by ESTs:

NM_125072.3

Supported by ESTs:

NM_203216.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: CwfJ-like family protein / zinc finger (CCCH-type) family protein

NP_200500.2

CwfJ-like family protein / zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, catalytic activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Histidine triad-like motif (InterPro:IPR011146), Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein (TAIR:AT1G56290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_974945.2

CwfJ-like family protein / zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, catalytic activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Histidine triad-like motif (InterPro:IPR011146), Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein (TAIR:AT1G56290.1); Has 929 Blast hits to 786 proteins in 187 species: Archae - 0; Bacteria - 11; Metazoa - 341; Fungi - 367; Plants - 103; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

23019245..23022765 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_203216.3 → NP_974945.2 CwfJ-like family protein / zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_974945.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q84WU9, Q9LTT0

UniProtKB/TrEMBL

A0A178UE57

Conserved Domains (4) summary

COG5084
Location:311 → 409

YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

cd07380
Location:6 → 231

MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

pfam04677
Location:370 → 491

CwfJ_C_1; Protein similar to CwfJ C-terminus 1

pfam04676
Location:504 → 593

CwfJ_C_2; Protein similar to CwfJ C-terminus 2
NM_001345224.1 → NP_001330052.1 CwfJ-like family protein / zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UE57, A0A1P8B9K8
NM_125072.3 → NP_200500.2 CwfJ-like family protein / zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_200500.2

Status: REVIEWED

UniProtKB/TrEMBL

F4K948

Conserved Domains (3) summary

pfam04676
Location:312 → 401

CwfJ_C_2; Protein similar to CwfJ C-terminus 2

pfam04677
Location:178 → 299

CwfJ_C_1; Protein similar to CwfJ C-terminus 1

cl13995
Location:1 → 39

MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain