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    Phosphotyrosine protein phosphatases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835762, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Phosphotyrosine protein phosphatases superfamily protein
    Primary source
    TAIR:AT5G56610
    Locus tag
    AT5G56610
    See related
    Araport:AT5G56610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIK19.6; MIK19_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (22916692..22918468)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene profilin Neighboring gene pseudo Neighboring gene NAC domain containing protein 99 Neighboring gene ncRNA Neighboring gene phosphofructokinase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phosphatidylglycerophosphate phosphatase is required for root growth in Arabidopsis. Lin YC, et al. Biochim Biophys Acta Mol Cell Biol Lipids, 2018 Jun. PMID 29476828
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001037007.1
    NM_125044.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables myosin phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylglycerophosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidylglycerophosphatase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphatidylglycerol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein dephosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phosphotyrosine protein phosphatases superfamily protein
    NP_001032084.1
    • Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G35680.1); Has 1221 Blast hits to 1220 proteins in 205 species: Archae - 35; Bacteria - 88; Metazoa - 709; Fungi - 59; Plants - 161; Viruses - 20; Other Eukaryotes - 149 (source: NCBI BLink).
    NP_200472.2
    • Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22916692..22918468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125044.4 → NP_200472.2  Phosphotyrosine protein phosphatases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200472.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K7Q7, Q6NKR2, Q9FJU7
      UniProtKB/TrEMBL
      A0A178UP45, A0A654GCM7
      Conserved Domains (1) summary
      cd14524
      Location:66 → 209
      PTPMT1; protein-tyrosine phosphatase mitochondrial 1

    2. NM_001037007.1 → NP_001032084.1  Phosphotyrosine protein phosphatases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032084.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UP45
      Conserved Domains (1) summary
      cl21483
      Location:77 → 166
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NKR2.1

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