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    NdhN oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835938, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NdhN
    Official Full Name
    oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
    Primary source
    TAIR:AT5G58260
    Locus tag
    AT5G58260
    See related
    Araport:AT5G58260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCK7.13; MCK7_13; NADH dehydrogenase-like complex N; NDH-N
    Summary
    Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
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    Genomic context

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    See NdhN in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23560568..23562001, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene transthyretin-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene FRAGILE HISTIDINE TRIAD Neighboring gene YCF54 Neighboring gene ABC transporter of the mitochondrion 3 Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene regulatory particle triple-A ATPase 3 Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. New subunits NDH-M, -N, and -O, encoded by nuclear genes, are essential for plastid Ndh complex functioning in higher plants. Rumeau D, et al. Plant Cell, 2005 Jan. PMID 15608332, Free PMC Article
    2. Multistep assembly of chloroplast NADH dehydrogenase-like subcomplex A requires several nucleus-encoded proteins, including CRR41 and CRR42, in Arabidopsis. Peng L, et al. Plant Cell, 2012 Jan. PMID 22274627, Free PMC Article
    3. Proteomics of the response of Arabidopsis thaliana to infection with Alternaria brassicicola. Mukherjee AK, et al. J Proteomics, 2010 Feb 10. PMID 19857612
    4. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125985.1
    NM_125211.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within NADH dehydrogenase complex (plastoquinone) assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to fungus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NAD(P)H dehydrogenase complex (plastoquinone) TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in chloroplast thylakoid membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor
    NP_001119457.1
    • oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: defense response to fungus, incompatible interaction, NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase, subunit N (InterPro:IPR020874); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_200634.1
    • oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: defense response to fungus, incompatible interaction, NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone), chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase, subunit N (InterPro:IPR020874); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23560568..23562001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125211.4 → NP_200634.1  oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200634.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H5R4, Q9LVM2
      UniProtKB/TrEMBL
      A0A178UG88, A0A5S9YFL5
      Conserved Domains (1) summary
      pfam11909
      Location:63 → 201
      NdhN; NADH-quinone oxidoreductase cyanobacterial subunit N

    2. NM_001125985.1 → NP_001119457.1  oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119457.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVM2
      Conserved Domains (1) summary
      pfam11909
      Location:63 → 163
      NdhN; NADH-quinone oxidoreductase cyanobacterial subunit N
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVM2.1

    Gene LinkOut

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