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    OBP4 OBF binding protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836206, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OBP4
    Official Full Name
    OBF binding protein 4
    Primary source
    TAIR:AT5G60850
    Locus tag
    AT5G60850
    See related
    Araport:AT5G60850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAE1.2; MAE1_2; OBF binding protein 4; ZINC FINGER PROTEIN OBP4
    Summary
    Encodes a zinc finger protein.
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    Genomic context

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    See OBP4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (24480291..24482163)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene basic leucine-zipper 70 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RAB GTPase homolog A1F

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The transcription factor OBP4 controls root growth and promotes callus formation. Ramirez-Parra E, et al. New Phytol, 2017 Mar. PMID 27859363
    2. AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Xu P, et al. Sci Rep, 2016 Jun 14. PMID 27297966, Free PMC Article
    3. Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana. Xu P, et al. PLoS Genet, 2019 Oct. PMID 31626627, Free PMC Article
    4. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Rymen B, et al. Plant Physiol, 2017 Mar. PMID 28167701, Free PMC Article
    5. The Dof family of plant transcription factors. Yanagisawa S. Trends Plant Sci, 2002 Dec. PMID 12475498

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Study identified a nitrogen-responsive signaling module that comprises both xyloglucan endotransglucosylase 9 (XTH9) and the Dof transcription factor OBP4 and controls lateral root (LR) development in Arabidopsis. OBP4 bound to the promoter of XTH9 to suppress XTH9 expression to antagonistically control XTH9 expression. OBP4-XTH9 module elaborately sustains LR development in response to nitrate treatment.
      Title: Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana.
    2. OBP4 is a negative regulator of cell cycle progression and cell growth.
      Title: AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana.
    3. Arabidopsis OBP4 (OBF Binding Protein 4) is a novel regulator of root growth and cell elongation and differentiation.
      Title: The transcription factor OBP4 controls root growth and promotes callus formation.
    4. Results suggest that OBF BINDING PROTEIN4 (OBP4)-mediated transcriptional repression of ROOT HAIR DEFECTIVE6-LIKE2 (RSL2) promoter to repress RSL2 contributes to the abscisic acid (ABA)-dependent inhibition of root hair growth.
      Title: ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_125478.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    OBF binding protein 4
    NP_200893.1
    • OBF binding protein 4 (OBP4); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24480291..24482163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125478.4 → NP_200893.1  OBF binding protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200893.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LDR0, Q9FJH1, Q9XGU5
      UniProtKB/TrEMBL
      A0A178UF84, A0A5S9YG40, Q0WUB6
      Conserved Domains (1) summary
      pfam02701
      Location:51 → 106
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LDR0.2

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