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    GR-RBP3 glycine-rich RNA-binding protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836224, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GR-RBP3
    Official Full Name
    glycine-rich RNA-binding protein 3
    Primary source
    TAIR:AT5G61030
    Locus tag
    AT5G61030
    See related
    Araport:AT5G61030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    glycine-rich RNA-binding protein 3; MAF19.4; MAF19_4
    Summary
    encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
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    Genomic context

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    See GR-RBP3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (24560309..24562527)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Replication factor-A protein 1-like protein Neighboring gene exocyst subunit exo70 family protein E2 Neighboring gene evolutionarily conserved C-terminal region 3 Neighboring gene uncharacterized protein Neighboring gene histone deacetylase-related / HD-like protein Neighboring gene histone deacetylase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering. Shi X, et al. Plant Physiol, 2016 Jan. PMID 26578708, Free PMC Article
    2. Two RNA recognition motif-containing proteins are plant mitochondrial editing factors. Shi X, et al. Nucleic Acids Res, 2015 Apr 20. PMID 25800738, Free PMC Article
    3. Characterization of transgenic Arabidopsis plants overexpressing GR-RBP4 under high salinity, dehydration, or cold stress. Kwak KJ, et al. J Exp Bot, 2005 Nov. PMID 16207746
    4. A family of RRM-type RNA-binding proteins specific to plant mitochondria. Vermel M, et al. Proc Natl Acad Sci U S A, 2002 Apr 30. PMID 11972043, Free PMC Article
    5. Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix. Ito J, et al. J Proteome Res, 2006 Dec. PMID 17137349

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001345440.1
    NM_125496.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding HDA PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables copper ion binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytidine to uridine editing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mitochondrial mRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich RNA-binding protein 3
    NP_200911.1
    • glycine-rich RNA-binding protein 3 (GR-RBP3); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 5 (TAIR:AT1G74230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24560309..24562527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125496.3 → NP_200911.1  glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200911.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNR1
      UniProtKB/TrEMBL
      A0A178UBT5, A0A5S9YG60
      Conserved Domains (1) summary
      cd21608
      Location:41 → 116
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins

    2. NM_001345440.1 → NP_001330940.1  glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FNR1
      UniProtKB/TrEMBL
      A0A178UBT5, A0A5S9YG60
      Conserved Domains (1) summary
      cd21608
      Location:41 → 116
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNR1.1

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