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    U5 small nuclear ribonucleoprotein helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836235, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U5 small nuclear ribonucleoprotein helicase
    Primary source
    TAIR:AT5G61140
    Locus tag
    AT5G61140
    See related
    Araport:AT5G61140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAF19.14; MAF19_14
    Summary
    Encodes a predicted protein with 30% identity with MER3/RCK.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    49
    Sequence:
    Chromosome: 5; NC_003076.8 (24589906..24603522)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc ion-binding protein Neighboring gene plasmodesmata callose-binding protein 1 Neighboring gene leo1-like family protein Neighboring gene anthocyanin 5-aromatic acyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_125507.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding HDA PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U5 small nuclear ribonucleoprotein helicase
    NP_001190584.1
    • U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2).
    NP_200922.2
    • U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24589906..24603522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203655.2 → NP_001190584.1  U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190584.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RY91, Q9FNQ1
      UniProtKB/TrEMBL
      A0A654GD05, A0A7G2FLX9
      Conserved Domains (2) summary
      COG1204
      Location:478 → 1273
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd18022
      Location:1355 → 1543
      DEXHc_ASCC3_2; C-terminal DEXH-box helicase domain of Activating signal cointegrator 1 complex subunit 3

    2. NM_125507.2 → NP_200922.2  U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200922.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FLX9, F4K203
      Conserved Domains (6) summary
      smart00490
      Location:1630 → 1711
      HELICc; helicase superfamily c-terminal domain
      smart00487
      Location:1340 → 1543
      DEXDc; DEAD-like helicases superfamily
      COG1204
      Location:478 → 1262
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      cd00079
      Location:710 → 897
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:509 → 686
      DEAD; DEAD/DEAH box helicase
      pfam02889
      Location:1008 → 1304
      Sec63; Sec63 Brl domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNQ1.1

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