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    RPN5B regulatory particle non-ATPase subunit 5B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836597, updated on 18-Sep-2024

    Summary

    Official Symbol
    RPN5B
    Official Full Name
    regulatory particle non-ATPase subunit 5B
    Primary source
    TAIR:AT5G64760
    Locus tag
    AT5G64760
    See related
    Araport:AT5G64760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MVP7.9; MVP7_9; regulatory particle non-ATPase subunit 5B
    Summary
    Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.
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    Genomic context

    See RPN5B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (25893780..25896586, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cellulose synthase 6 Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene root meristem growth factor Neighboring gene holocarboxylase synthetase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001037065.2
    NM_001345648.1
    NM_125872.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     
    located_in nucleus TAS
    Traceable Author Statement
    more info
    PubMed 
    part_of proteasome complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    regulatory particle non-ATPase subunit 5B
    NP_001032142.1
    • regulatory particle non-ATPase subunit 5B (RPN5B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN5) (TAIR:AT5G09900.2); Has 838 Blast hits to 828 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 291; Plants - 115; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
    NP_568994.2
    • regulatory particle non-ATPase subunit 5B (RPN5B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN5) (TAIR:AT5G09900.1); Has 840 Blast hits to 830 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 291; Plants - 115; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25893780..25896586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125872.4NP_568994.2  regulatory particle non-ATPase subunit 5B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568994.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VWK0, Q9FGF7
      UniProtKB/TrEMBL
      A0A178UGS0
      Conserved Domains (1) summary
      COG5071
      Location:7438
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    2. NM_001037065.2NP_001032142.1  regulatory particle non-ATPase subunit 5B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032142.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGS0, F4KF39
      Conserved Domains (1) summary
      COG5071
      Location:7438
      RPN5; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    3. NM_001345648.1NP_001332553.1  regulatory particle non-ATPase subunit 5B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGS0, A0A1P8BHB1