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    programmed cell death 2 C-terminal domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836606, updated on 18-Sep-2024

    Summary

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    Official Full Name
    programmed cell death 2 C-terminal domain-containing protein
    Primary source
    TAIR:AT5G64830
    Locus tag
    AT5G64830
    See related
    Araport:AT5G64830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXK3.5; MXK3_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (25914567..25916652, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene thionin-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene general control non-repressible 5 Neighboring gene sorbin/SH3 domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001037066.2
    NM_001345654.1
    NM_125881.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    programmed cell death 2 C-terminal domain-containing protein
    NP_001032143.1
    • programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 591 Blast hits to 590 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 244; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    NP_201288.1
    • programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25914567..25916652 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125881.4 → NP_201288.1  programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201288.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YI94, A0A654GF66, Q9LV94
      Conserved Domains (1) summary
      pfam04194
      Location:239 → 366
      PDCD2_C; Programmed cell death protein 2, C-terminal putative domain

    2. NM_001345654.1 → NP_001330740.1  programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBQ2

    3. NM_001037066.2 → NP_001032143.1  programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032143.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DH89
      Conserved Domains (1) summary
      pfam04194
      Location:164 → 283
      PDCD2_C; Programmed cell death protein 2, C-terminal putative domain
    Nucleotide Protein
    Heading Accession and Version

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