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    AGL26 tRNA (cytidine(34)-2'-O)-methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832746, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGL26
    Official Full Name
    tRNA (cytidine(34)-2'-O)-methyltransferase
    Primary source
    TAIR:AT5G26880
    Locus tag
    AT5G26880
    See related
    Araport:AT5G26880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 26; F2P16.25; F2P16_25
    Summary
    Root Specific
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    Genomic context

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    See AGL26 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (9457691..9459221, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene lon protease 1 Neighboring gene AGAMOUS-like MADS-box protein Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana. Gan Y, et al. Planta, 2005 Nov. PMID 16021502
    2. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. de Folter S, et al. Plant Cell, 2005 May. PMID 15805477, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343985.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular response to nitrogen starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA (cytidine(34)-2'-O)-methyltransferase
    NP_001318659.1
    • AGAMOUS-like 26 (AGL26); FUNCTIONS IN: RNA binding, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, RNA methyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 89 (TAIR:AT5G27580.1); Has 6012 Blast hits to 6012 proteins in 2123 species: Archae - 0; Bacteria - 4418; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1549 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9457691..9459221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343985.1 → NP_001318659.1  tRNA (cytidine(34)-2'-O)-methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI04, A0A5S9Y7H8, F4K1D2, Q6NPL4
      Conserved Domains (1) summary
      cd18094
      Location:83 → 237
      SpoU-like_TrmL; SAM-dependent tRNA methylase related to TrmL
    Nucleotide Protein
    Heading Accession and Version

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