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    TBL19 TRICHOME BIREFRINGENCE-LIKE 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831447, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL19
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 19
    Primary source
    TAIR:AT5G15900
    Locus tag
    AT5G15900
    See related
    Araport:AT5G15900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N13.40; F1N13_40; TRICHOME BIREFRINGENCE-LIKE 19
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL19 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (5189376..5192176, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase family 81 protein Neighboring gene golgin family A protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 21 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene structural maintenance of chromosomes 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121595.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 19
    NP_197094.1
    • TRICHOME BIREFRINGENCE-LIKE 19 (TBL19); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 21 (TAIR:AT5G15890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5189376..5192176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343426.1 → NP_001331997.1  TRICHOME BIREFRINGENCE-LIKE 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BFJ2, A0A5S9Y4H9, A0A654G1H5

    2. NM_121595.3 → NP_197094.1  TRICHOME BIREFRINGENCE-LIKE 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197094.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFT0
      UniProtKB/TrEMBL
      A0A5S9Y4H9, A0A654G1H5, A0A6G8RRL6
      Conserved Domains (2) summary
      pfam13839
      Location:121 → 408
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:65 → 118
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFT0.1

    Gene LinkOut

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