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    FAR6 fatty acid reductase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824837, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FAR6
    Official Full Name
    fatty acid reductase 6
    Primary source
    TAIR:AT3G56700
    Locus tag
    AT3G56700
    See related
    Araport:AT3G56700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtFAR6; fatty acid reductase 6
    Summary
    Encodes a fatty-acyl-CoA reductase that is expressed in response to wounding.
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    Genomic context

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    See FAR6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (20999409..21002155, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/associated interaction domain protein Neighboring gene Single-stranded nucleic acid binding R3H protein Neighboring gene Cam interacting protein 111 Neighboring gene ncRNA Neighboring gene sigma factor binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Upstream sequence of fatty acyl-CoA reductase (FAR6) of Arabidopsis thaliana drives wound-inducible and stem-specific expression. Gupta NC, et al. Plant Cell Rep, 2012 May. PMID 22189440
    2. Biochemical characterization of a chloroplast localized fatty acid reductase from Arabidopsis thaliana. Doan TT, et al. Biochim Biophys Acta, 2012 Sep. PMID 22166367
    3. Functional expression of five Arabidopsis fatty acyl-CoA reductase genes in Escherichia coli. Doan TT, et al. J Plant Physiol, 2009 May 15. PMID 19062129
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FAR6 is expressed in mature stem tissues, is wound inducible, and is also expressed in floral organs.
      Title: Upstream sequence of fatty acyl-CoA reductase (FAR6) of Arabidopsis thaliana drives wound-inducible and stem-specific expression.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_001339805.1
    NM_115529.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables alcohol-forming long-chain fatty acyl-CoA reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables alcohol-forming very long-chain fatty acyl-CoA reductase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    fatty acid reductase 6
    NP_191229.1
    • fatty acid reductase 6 (FAR6); FUNCTIONS IN: fatty-acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: Jojoba acyl CoA reductase-related male sterility protein (TAIR:AT3G11980.1); Has 2302 Blast hits to 2276 proteins in 434 species: Archae - 2; Bacteria - 606; Metazoa - 984; Fungi - 228; Plants - 282; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20999409..21002155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115529.2 → NP_191229.1  fatty acid reductase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191229.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA16
      Conserved Domains (3) summary
      cd09071
      Location:450 → 518
      FAR_C; C-terminal domain of fatty acyl CoA reductases
      cd05236
      Location:84 → 405
      FAR-N_SDR_e; fatty acyl CoA reductases (FARs), extended (e) SDRs
      PLN02996
      Location:77 → 518
      PLN02996; fatty acyl-CoA reductase

    2. NM_001339805.1 → NP_001326776.1  fatty acid reductase 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1B1CQJ6, B9TSP7, Q9LET6
      UniProtKB/TrEMBL
      A0A178VA16
      Conserved Domains (1) summary
      PLN02503
      Location:73 → 542
      PLN02503; fatty acyl-CoA reductase 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9TSP7.1

    Gene LinkOut

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