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    Plant Tudor-like RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832125, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant Tudor-like RNA-binding protein
    Primary source
    TAIR:AT5G20030
    Locus tag
    AT5G20030
    See related
    Araport:AT5G20030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.180; F28I16_180
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (6764727..6766702, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RAS-related nuclear protein-1 Neighboring gene RAS-related GTP-binding nuclear protein 2 Neighboring gene isopentenyltransferase 9 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343635.1
    NM_122010.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant Tudor-like RNA-binding protein
    NP_197503.1
    • Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like RNA-binding protein (TAIR:AT4G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6764727..6766702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122010.3 → NP_197503.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197503.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUJ5, A0A384K9F1, Q8LES5
      Conserved Domains (3) summary
      smart00743
      Location:64 → 120
      Agenet; Tudor-like domain present in plant sequences
      pfam03735
      Location:265 → 320
      ENT; ENT domain
      pfam05641
      Location:6 → 58
      Agenet; Agenet domain

    2. NM_001343635.1 → NP_001330569.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUJ5, A0A384K9F1, Q8LES5
      Conserved Domains (3) summary
      smart00743
      Location:64 → 120
      Agenet; Tudor-like domain present in plant sequences
      pfam03735
      Location:265 → 320
      ENT; ENT domain
      pfam05641
      Location:6 → 58
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

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