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    tudor domain protein (DUF1767) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832117, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tudor domain protein (DUF1767)
    Primary source
    TAIR:AT5G19950
    Locus tag
    AT5G19950
    See related
    Araport:AT5G19950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.100; F28I16_100
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6740777..6743850, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene integral membrane protein (Protein of unknown function DUF92, transmembrane) Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene GRAS family transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122002.3
    NM_180523.3
    NM_203084.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tudor domain protein (DUF1767)
    NP_568387.1
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850854.1
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 573 Blast hits to 514 proteins in 137 species: Archae - 0; Bacteria - 22; Metazoa - 276; Fungi - 58; Plants - 111; Viruses - 3; Other Eukaryotes - 103 (source: NCBI BLink).
    NP_974813.1
    • CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1767 (InterPro:IPR013894); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1767) (TAIR:AT5G63540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6740777..6743850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180523.3 → NP_850854.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850854.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI80, A0A654G2V3, Q8L502
      Conserved Domains (1) summary
      pfam08585
      Location:32 → 185
      RMI1_N; RecQ mediated genome instability protein

    2. NM_203084.2 → NP_974813.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974813.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI80, F4K2P4
      Conserved Domains (1) summary
      pfam08585
      Location:32 → 185
      RMI1_N; RecQ mediated genome instability protein

    3. NM_122002.3 → NP_568387.1  tudor domain protein (DUF1767) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568387.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UI80, A0A654G2V3, Q8L502
      Conserved Domains (1) summary
      pfam08585
      Location:32 → 185
      RMI1_N; RecQ mediated genome instability protein
    Nucleotide Protein
    Heading Accession and Version

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