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    BG5 beta-1,3-glucanase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832156, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BG5
    Official Full Name
    beta-1,3-glucanase 5
    Primary source
    TAIR:AT5G20340
    Locus tag
    AT5G20340
    See related
    Araport:AT5G20340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    3-glucanase 5; beta-1; F5O24.230; F5O24_230
    Summary
    Encodes a putative beta 1,3-glucanase.
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    Genomic context

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    See BG5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (6874787..6875926)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene dicer-like 4 Neighboring gene beta-1,3-glucanase 4 Neighboring gene Ankyrin repeat family protein with DHHC zinc finger domain-containing protein Neighboring gene Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Neighboring gene serine-rich protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel flower-specific Arabidopsis gene related to both pathogen-induced and developmentally regulated plant beta-1,3-glucanase genes. Delp G, et al. Plant Mol Biol, 1999 Feb. PMID 10092183
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucan endo-1,3-beta-D-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glucan exo-1,3-beta-glucosidase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    beta-1,3-glucanase 5
    NP_197534.1
    • beta-1,3-glucanase 5 (BG5); FUNCTIONS IN: glucan 1,3-beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 4 (TAIR:AT5G20330.1); Has 2100 Blast hits to 2086 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2090; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6874787..6875926
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122041.2 → NP_197534.1  beta-1,3-glucanase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197534.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49353
      UniProtKB/TrEMBL
      A0A654G2Z4
      Conserved Domains (1) summary
      cl23725
      Location:43 → 353
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49353.1

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