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    TBL5 TRICHOME BIREFRINGENCE-LIKE 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832181, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL5
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 5
    Primary source
    TAIR:AT5G20590
    Locus tag
    AT5G20590
    See related
    Araport:AT5G20590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7C8.180; F7C8_180; TRICHOME BIREFRINGENCE-LIKE 5
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (6963338..6966226)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RING-box 1 Neighboring gene TMEM192 family protein Neighboring gene ribosomal RNA processing-like protein Neighboring gene EEIG1/EHBP1 protein amino-terminal domain protein Neighboring gene ubiquitin 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343675.1
    NM_122066.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 5
    NP_197559.1
    • TRICHOME BIREFRINGENCE-LIKE 5 (TBL5); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT1G60790.1); Has 1351 Blast hits to 1334 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1350; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6963338..6966226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122066.4 → NP_197559.1  TRICHOME BIREFRINGENCE-LIKE 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197559.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K5K4, Q8LD24
      UniProtKB/TrEMBL
      A0A178USI5, A0A5S9Y5Y0, A0A654G2U4
      Conserved Domains (2) summary
      pfam13839
      Location:194 → 478
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:140 → 193
      PMR5N; PMR5 N terminal Domain

    2. NM_001343675.1 → NP_001331307.1  TRICHOME BIREFRINGENCE-LIKE 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDG5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K5K4.1

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