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    BSD domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839171, updated on 18-Sep-2024

    Summary

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    Official Full Name
    BSD domain-containing protein
    Primary source
    TAIR:AT1G26300
    Locus tag
    AT1G26300
    See related
    Araport:AT1G26300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28B23.4; F28B23_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (9095768..9099766, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cryptochrome-interacting basic-helix-loop-helix 5 Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein Neighboring gene uncharacterized protein Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Zinc-binding dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332710.1
    NM_102394.3
    NM_202185.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    BSD domain-containing protein
    NP_001319084.1
    • BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_173954.2
    • BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9095768..9099766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102394.3 → NP_173954.2  BSD domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173954.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0L8, A0A5S9W0M2, Q67YP2, Q941A9
      Conserved Domains (1) summary
      smart00751
      Location:162 → 210
      BSD; domain in transcription factors and synapse-associated proteins

    2. NM_001332710.1 → NP_001319084.1  BSD domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1T1, F4IE56

    3. NM_202185.2 → NP_973914.1  BSD domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973914.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1T1, F4IE56
      Conserved Domains (1) summary
      smart00751
      Location:162 → 210
      BSD; domain in transcription factors and synapse-associated proteins
    Nucleotide Protein
    Heading Accession and Version

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