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    PDS3 phytoene desaturase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827061, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDS3
    Official Full Name
    phytoene desaturase 3
    Primary source
    TAIR:AT4G14210
    Locus tag
    AT4G14210
    See related
    Araport:AT4G14210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3145C; FCAALL.28; PDE226; PDS; PHYTOENE DESATURASE; phytoene desaturase 3; PIGMENT DEFECTIVE 226
    Summary
    Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.
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    Genomic context

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    See PDS3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (8190190..8195320, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene putative recombination initiation defect 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene RING-H2 group F1A Neighboring gene A20/AN1-like zinc finger family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis. Qin G, et al. Cell Res, 2007 May. PMID 17486124
    2. Assessment of penetrance and expressivity of RNAi-mediated silencing of the Arabidopsis phytoene desaturase gene. Wang T, et al. New Phytol, 2005 Sep. PMID 16101912
    3. Regulation of phytoene desaturase expression is independent of leaf pigment content in Arabidopsis thaliana. Wetzel CM, et al. Plant Mol Biol, 1998 Aug. PMID 9700076
    4. Two Arabidopsis thaliana carotene desaturases, phytoene desaturase and zeta-carotene desaturase, expressed in Escherichia coli, catalyze a poly-cis pathway to yield pro-lycopene. Bartley GE, et al. Eur J Biochem, 1999 Jan. PMID 9914519
    5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340907.1
    NM_001340908.1
    NM_117498.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phytoene dehydrogenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within carotene biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within carotenoid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chromoplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    phytoene desaturase 3
    NP_001319934.1
    • phytoene desaturase 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: zeta-carotene desaturase (TAIR:AT3G04870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_193157.1
    • phytoene desaturase 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: zeta-carotene desaturase (TAIR:AT3G04870.2); Has 4307 Blast hits to 4306 proteins in 952 species: Archae - 70; Bacteria - 2299; Metazoa - 368; Fungi - 90; Plants - 493; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8190190..8195320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117498.4 → NP_193157.1  phytoene desaturase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193157.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JUN0, Q07356
      UniProtKB/TrEMBL
      A0A178UUG9, Q93ZB4
      Conserved Domains (1) summary
      PLN02612
      Location:4 → 566
      PLN02612; phytoene desaturase

    2. NM_001340907.1 → NP_001319934.1  phytoene desaturase 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JUN0, Q07356
      UniProtKB/TrEMBL
      A0A178UUG9, Q93ZB4
      Conserved Domains (1) summary
      PLN02612
      Location:4 → 566
      PLN02612; phytoene desaturase

    3. NM_001340908.1 → NP_001329033.1  phytoene desaturase 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JUN0, Q07356
      UniProtKB/TrEMBL
      A0A178UUG9, Q93ZB4
      Conserved Domains (1) summary
      PLN02612
      Location:4 → 566
      PLN02612; phytoene desaturase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07356.1

    Gene LinkOut

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