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    Cyclophilin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841030, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cyclophilin
    Primary source
    TAIR:AT1G44478
    Locus tag
    AT1G44478
    See related
    Araport:AT1G44478
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18F15.6; T18F15_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (16852341..16853238, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene zinc-ribbon domain protein Neighboring gene Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein Neighboring gene pseudo Neighboring gene Cyclase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_103549.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cyclophilin
    NP_175089.1
    • Cyclophilin; BEST Arabidopsis thaliana protein match is: cyclophilin 59 (TAIR:AT1G53720.1); Has 400 Blast hits to 376 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 13; Plants - 87; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16852341..16853238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103549.1 → NP_175089.1  Cyclophilin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175089.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EL72, Q94LA7
      Conserved Domains (1) summary
      cl00197
      Location:14 → 61
      cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...
    Nucleotide Protein
    Heading Accession and Version

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