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    AtMT4b Plant EC metallothionein-like protein, family 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816856, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AtMT4b
    Official Full Name
    Plant EC metallothionein-like protein, family 15
    Primary source
    TAIR:AT2G23240
    Locus tag
    AT2G23240
    See related
    Araport:AT2G23240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana metallothionein 4b; T20D16.13; T20D16_13
    Summary
    AtMT4b is a member of Type 4 metallothionein (MT) genes. It is involved in the early develoment of the embryo and in the accumulation of metal ions especially Zn in the seeds.
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    Genomic context

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    See AtMT4b in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (9895680..9896347, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 81, subfamily D, polypeptide 6 Neighboring gene Terpenoid cyclases/Protein prenyltransferases superfamily protein Neighboring gene UDP-glucosyl transferase 84B2 Neighboring gene UDP-glucosyl transferase 84B1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Type 4 metallothionein genes are involved in regulating Zn ion accumulation in late embryo and in controlling early seedling growth in Arabidopsis. Ren Y, et al. Plant Cell Environ, 2012 Apr. PMID 22014117
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127888.2
    NM_201791.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within zinc ion transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Plant EC metallothionein-like protein, family 15
    NP_179905.1
    • Plant EC metallothionein-like protein, family 15; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: Plant EC metallothionein-like protein, family 15 (TAIR:AT2G42000.2); Has 284 Blast hits to 225 proteins in 80 species: Archae - 0; Bacteria - 6; Metazoa - 54; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    NP_973520.1
    • Plant EC metallothionein-like protein, family 15; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: Plant EC metallothionein-like protein, family 15 (TAIR:AT2G42000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9895680..9896347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127888.2 → NP_179905.1  Plant EC metallothionein-like protein, family 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179905.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q42377, Q9SLN4
      UniProtKB/TrEMBL
      A0A178VZU5, A0A5S9X0K3, A0A654EWZ3
      Conserved Domains (1) summary
      pfam02068
      Location:13 → 85
      Metallothio_PEC; Plant PEC family metallothionein

    2. NM_201791.1 → NP_973520.1  Plant EC metallothionein-like protein, family 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973520.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0K3, A0A654EWZ3, F4ILI2
      Conserved Domains (1) summary
      pfam02068
      Location:14 → 84
      Metallothio_PEC; Plant PEC family metallothionein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q42377.2

    Gene LinkOut

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