U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    bcl2l13 BCL2 like 13 [ Danio rerio (zebrafish) ]

    Gene ID: 559355, updated on 9-Dec-2024

    Summary

    Official Symbol
    bcl2l13provided by ZNC
    Official Full Name
    BCL2 like 13provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050419-215
    See related
    Ensembl:ENSDARG00000062370 AllianceGenome:ZFIN:ZDB-GENE-050419-215
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-238n5.7
    Summary
    Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be active in membrane. Orthologous to human BCL2L13 (BCL2 like 13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See bcl2l13 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (20581806..20608273, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (20592817..20619273, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene WEE2 oocyte meiosis inhibiting kinase Neighboring gene BH3 interacting domain death agonist Neighboring gene wingless-type MMTV integration site family member 2 Neighboring gene ankyrin repeat, SAM and basic leucine zipper domain containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    bcl-2-like protein 13
    Names
    BCL2-like 13 (apoptosis facilitator)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044891.2NP_001038356.1  bcl-2-like protein 13

      See identical proteins and their annotated locations for NP_001038356.1

      Status: PROVISIONAL

      Source sequence(s)
      BC139852
      UniProtKB/TrEMBL
      F6NNU3, Q1LX53
      Related
      ENSDARP00000084589.3, ENSDART00000090156.5
      Conserved Domains (1) summary
      pfam00452
      Location:108195
      Bcl-2; Apoptosis regulator proteins, Bcl-2 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      20581806..20608273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159108.5XP_005159165.1  bcl-2-like protein 13 isoform X1

      See identical proteins and their annotated locations for XP_005159165.1

      UniProtKB/TrEMBL
      F6NNU3, Q1LX53
      Related
      ENSDARP00000120878.1, ENSDART00000140632.3
      Conserved Domains (1) summary
      pfam00452
      Location:108195
      Bcl-2; Apoptosis regulator proteins, Bcl-2 family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395022.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      182105..206257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)