ppp1r3ca protein phosphatase 1, regulatory subunit 3Ca [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ppp1r3caprovided by ZNC
Official Full Name: protein phosphatase 1, regulatory subunit 3Caprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-70
See related: Ensembl:ENSDARG00000071005 AllianceGenome:ZFIN:ZDB-GENE-040718-70
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb444; sb:cb444; zgc:92069; wu:fb50a11; wu:fc17c07
Summary: Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be part of protein phosphatase type 1 complex. Is expressed in several structures, including forebrain neural keel; margin; presumptive diencephalon; tail bud; and yolk syncytial layer. Orthologous to human PPP1R3C (protein phosphatase 1 regulatory subunit 3C). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (23311375..23314180)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (23291331..23294156)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

AI477995 (e-PCR)
- UniSTS:206419

fc19f02.x1 (e-PCR)
- UniSTS:192935

fc19f02.x1 (e-PCR)
- UniSTS:192936

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycogen binding	IBA Inferred from Biological aspect of Ancestor more info
enables protein phosphatase 1 binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in glycogen biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within glycogen metabolic process	IEA Inferred from Electronic Annotation more info
involved_in regulation of glycogen biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of protein phosphatase type 1 complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: protein phosphatase 1, regulatory subunit 3Ca

Names: protein phosphatase 1, regulatory (inhibitor) subunit 3Ca

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.