si:ch73-109d9.2 si:ch73-109d9.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch73-109d9.2provided by ZNC
Official Full Name: si:ch73-109d9.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5611
See related: Ensembl:ENSDARG00000103871 AllianceGenome:ZFIN:ZDB-GENE-030131-5611
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi06b03; fi12a09; wu:fi06b03; wu:fi12a09
Summary: Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:ch73-109d9.2 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (44040211..44048812, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (43339047..43347648, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC565042

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001244778.1 → NP_001231707.1 uncharacterized protein LOC565042

Status: VALIDATED

Source sequence(s)

CU915778

UniProtKB/TrEMBL

A0A8M1NZ70, F1QNC0

Related

ENSDARP00000068236.5, ENSDART00000073746.6

Conserved Domains (4) summary

COG5048
Location:360 → 494

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:418 → 438

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:360 → 382

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:430 → 455

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007112.7 Reference GRCz11 Primary Assembly

Range

44040211..44048812 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005160071.4 → XP_005160128.1 uncharacterized protein LOC565042 isoform X1

UniProtKB/TrEMBL

A0A8M2B6X4

Conserved Domains (4) summary

COG5048
Location:359 → 493

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:417 → 437

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:359 → 381

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:429 → 454

zf-H2C2_2; Zinc-finger double domain