jade3 jade family PHD finger 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: jade3provided by ZNC
Official Full Name: jade family PHD finger 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-928
See related: Ensembl:ENSDARG00000019614 AllianceGenome:ZFIN:ZDB-GENE-030131-928
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: phf16; wu:fb53c02
Summary: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of histone acetyltransferase complex. Orthologous to human JADE3 (jade family PHD finger 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (37478762..37513032, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (37500871..37535116, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AI496939 (e-PCR)
- UniSTS:206382

fb53c02.x1 (e-PCR)
- UniSTS:190676

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of histone acetyltransferase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: protein Jade-3

Names: PHD finger protein 16; jade family PHD finger protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201652.2 → NP_970614.2 protein Jade-3

Status: VALIDATED

Source sequence(s)

BX322552, BX323016

UniProtKB/Swiss-Prot

Q7ZVP1

UniProtKB/TrEMBL

A0A8N1Z3S9, F1Q6Z0

Related

ENSDARP00000120486.1, ENSDART00000147826.3

Conserved Domains (4) summary

COG5141
Location:139 → 555

COG5141; PHD zinc finger-containing protein [General function prediction only]

cd15681
Location:203 → 252

PHD_JADE3; PHD finger found in protein Jade-3 and similar proteins

cd15706
Location:256 → 366

ePHD_JADE3; Extended PHD finger found in protein Jade-3 and similar proteins

pfam10513
Location:89 → 178

EPL1; Enhancer of polycomb-like