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    swt1 SWT1 RNA endoribonuclease homolog [ Danio rerio (zebrafish) ]

    Gene ID: 559432, updated on 9-Dec-2024

    Summary

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    Official Symbol
    swt1provided by ZNC
    Official Full Name
    SWT1 RNA endoribonuclease homologprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041015-373
    See related
    Ensembl:ENSDARG00000094010 AllianceGenome:ZFIN:ZDB-GENE-041015-373
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb81g09; si:dkeyp-11g8.2; si:dkeyp-11g8.4
    Summary
    Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See swt1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (34343651..34404780, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (34440291..34485489, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene hemicentin 1 Neighboring gene influenza virus NS1A binding protein a Neighboring gene tRNA methyltransferase 1-like Neighboring gene niban apoptosis regulator 1a Neighboring gene kinesin-associated protein 3a Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    transcriptional protein SWT1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      34343651..34404780 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215667.1 → XP_068071768.1  transcriptional protein SWT1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P2Z5

    2. XM_009294796.4 → XP_009293071.1  transcriptional protein SWT1 isoform X1

      See identical proteins and their annotated locations for XP_009293071.1

      UniProtKB/TrEMBL
      A0A8M9P2Z5
      Conserved Domains (1) summary
      cd09880
      Location:467 → 608
      PIN_Smg5-Smg6-like; PIN domain

    3. XM_017352631.3 → XP_017208120.1  transcriptional protein SWT1 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z2T3

    4. XM_009294798.4 → XP_009293073.1  transcriptional protein SWT1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3ATD3
      Related
      ENSDARP00000113234.2, ENSDART00000133593.4
      Conserved Domains (1) summary
      cd09880
      Location:467 → 608
      PIN_Smg5-Smg6-like; PIN domain

    5. XM_021468647.2 → XP_021324322.1  transcriptional protein SWT1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P2Z5
      Conserved Domains (1) summary
      cd09880
      Location:467 → 608
      PIN_Smg5-Smg6-like; PIN domain
    Nucleotide Protein Strain
    Heading Accession and Version

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