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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001312881.1 → NP_001299810.1 RNA-binding protein FXR1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
CU468728
- UniProtKB/TrEMBL
-
A0A9F7TY55
- Related
- ENSDARP00000124192.1, ENSDART00000149482.3
- Conserved Domains (7) summary
-
- smart00322
Location:220 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:70 → 115
- Agenet; Agenet domain
- pfam12235
Location:354 → 463
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:483 → 556
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:601 → 642
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
- cl12013
Location:117 → 230
- BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
-
NM_201301.2 → NP_958458.2 RNA-binding protein FXR1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
- Source sequence(s)
-
CK028714, CK029878, CN317510, CU468728, EH586881
- UniProtKB/Swiss-Prot
- A0A8M1P7M4, A0A8M1PJ50, F1QLR3
- Related
- ENSDARP00000095251.3, ENSDART00000104478.4
- Conserved Domains (7) summary
-
- smart00322
Location:220 → 280
- KH; K homology RNA-binding domain
- cd00105
Location:286 → 352
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam05641
Location:70 → 115
- Agenet; Agenet domain
- pfam12235
Location:354 → 463
- FXMRP1_C_core; Fragile X-related 1 protein core C terminal
- pfam16096
Location:483 → 557
- FXR_C1; Fragile X-related 1 protein C-terminal region 2
- pfam16097
Location:575 → 616
- FXR_C3; Fragile X-related 1 protein C-terminal region 3
- cl12013
Location:117 → 230
- BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCz11 Primary Assembly
Genomic
-
NC_007133.7 Reference GRCz11 Primary Assembly
- Range
-
37542727..37565393 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)