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    si:ch73-173p19.1 si:ch73-173p19.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100332407, updated on 27-Dec-2024

    Summary

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    Official Symbol
    si:ch73-173p19.1provided by ZNC
    Official Full Name
    si:ch73-173p19.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-952
    See related
    Ensembl:ENSDARG00000089075 AllianceGenome:ZFIN:ZDB-GENE-130530-952
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ubiquitin binding activity. Is expressed in female organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-173p19.1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (33392785..33428961)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (33478360..33513650)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-406l10.2 Neighboring gene solute carrier family 4 member 2b Neighboring gene si:ch73-173p19.2 Neighboring gene regulator of MON1-CCZ1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch73-173p19.1
    Names
    toll-like receptor 12
    zmp:0000000949

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      33392785..33428961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002660922.7 → XP_002660968.3  uncharacterized protein si:ch73-173p19.1

      UniProtKB/TrEMBL
      A0A8M1RQT6, E7FGB9
      Related
      ENSDARP00000112095.1, ENSDART00000122579.3
      Conserved Domains (6) summary
      cd09293
      Location:750 → 888
      AMN1; Antagonist of mitotic exit network protein 1
      COG4886
      Location:524 → 710
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00034
      Location:545 → 569
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam09805
      Location:116 → 169
      Nop25; Nucleolar protein 12 (25kDa)
      cl00155
      Location:187 → 260
      UBQ; Ubiquitin-like proteins
      cl21463
      Location:6 → 43
      UBA_like_SF; UBA domain-like superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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