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    ogfr1 opioid growth factor receptor 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100038769, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ogfr1provided by ZNC
    Official Full Name
    opioid growth factor receptor 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070424-58
    See related
    Ensembl:ENSDARG00000099409 AllianceGenome:ZFIN:ZDB-GENE-070424-58
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:162182
    Summary
    Predicted to enable opioid growth factor receptor activity. Predicted to be located in membrane. Orthologous to human OGFR (opioid growth factor receptor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ogfr1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (20898956..20906256)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (20064410..20071705)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene cadherin 4, type 1, R-cadherin (retinal) Neighboring gene putative nuclease HARBI1 Neighboring gene opioid growth factor receptor-like protein 1 Neighboring gene uncharacterized LOC137496648 Neighboring gene TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor Neighboring gene opioid growth factor receptor-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity. Levraud JP, et al. J Immunol, 2019 Dec 15. PMID 31732531
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables opioid growth factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    opioid growth factor receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089549.2 → NP_001083018.1  opioid growth factor receptor 1

      See identical proteins and their annotated locations for NP_001083018.1

      Status: VALIDATED

      Source sequence(s)
      CABZ01008730
      UniProtKB/TrEMBL
      A0A8M1NEF2, A4IG38
      Related
      ENSDARP00000135068.1, ENSDART00000163029.2
      Conserved Domains (1) summary
      pfam04664
      Location:62 → 263
      OGFr_N; Opioid growth factor receptor (OGFr) conserved region

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      20898956..20906256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172867.5 → XP_005172924.1  opioid growth factor receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BK65, A0A8M3ARV2
      Conserved Domains (1) summary
      pfam04664
      Location:58 → 263
      OGFr_N; Opioid growth factor receptor (OGFr) conserved region

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395299.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      59658..66999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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