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    si:dkeyp-46h3.2 si:dkeyp-46h3.2 [ Danio rerio (zebrafish) ]

    Gene ID: 335411, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkeyp-46h3.2provided by ZNC
    Official Full Name
    si:dkeyp-46h3.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7351
    See related
    Ensembl:ENSDARG00000092498 AllianceGenome:ZFIN:ZDB-GENE-030131-7351
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj09f07; wu:fj09f07
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See si:dkeyp-46h3.2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (27586820..27588833, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (27993166..28004610, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene L-rhamnose-binding lectin CSL2-like Neighboring gene si:dkeyp-46h3.3 Neighboring gene cilia and flagella associated protein 90 Neighboring gene adenylate cyclase 2b (brain)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC335411

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001114887.2 → NP_001108359.2  uncharacterized protein LOC335411 precursor

      Status: VALIDATED

      Source sequence(s)
      EH445739, EH534347
      UniProtKB/TrEMBL
      A0A8M1NHU7, A3KQ79
      Related
      ENSDARP00000105057.2, ENSDART00000121643.3
      Conserved Domains (1) summary
      pfam02140
      Location:146 → 227
      Gal_Lectin; Galactose binding lectin domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      27586820..27588833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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