zftraf1 zinc finger TRAF-type containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zftraf1provided by ZNC
Official Full Name: zinc finger TRAF-type containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-060929-720
See related: Ensembl:ENSDARG00000061057 AllianceGenome:ZFIN:ZDB-GENE-060929-720
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cyhr1; fi59b02; wu:fi59b02; zgc:153061
Summary: Predicted to enable metal ion binding activity. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in nucleus. Orthologous to human ZFTRAF1 (zinc finger TRAF-type containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (42918063..42928979, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (43349842..43359542, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fi59b02.x1 (e-PCR)
- UniSTS:197750

fc67a01.x1 (e-PCR)
- UniSTS:194222

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in perinuclear region of cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger TRAF-type-containing protein 1

Names: cysteine and histidine-rich protein 1; cysteine and histidine-rich protein 1-like; cysteine/histidine-rich 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.