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    si:ch211-195b21.5 si:ch211-195b21.5 [ Danio rerio (zebrafish) ]

    Gene ID: 563381, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:ch211-195b21.5provided by ZNC
    Official Full Name
    si:ch211-195b21.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-954
    See related
    Ensembl:ENSDARG00000117464 AllianceGenome:ZFIN:ZDB-GENE-030131-954
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb54a03; wu:fb54a03
    Orthologs
    all
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    Genomic context

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    See si:ch211-195b21.5 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (23222290..23233022)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (23202249..23212998)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene RAS guanyl releasing protein 3 (calcium and DAG-regulated) Neighboring gene family with sequence similarity 98 member A Neighboring gene TBC1 domain family, member 12a Neighboring gene D(1)-like dopamine receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RBBP6; NK-tumor recognition protein; uncharacterized protein LOC563381

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      23222290..23233022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001922576.6 → XP_001922611.1  E3 ubiquitin-protein ligase RBBP6

      UniProtKB/TrEMBL
      A0A8M9PSP0
      Related
      ENSDART00000194760.1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394988.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      244489..256824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473150.1 → XP_021328825.1  NK-tumor recognition protein

      UniProtKB/TrEMBL
      A0A8M9Q6L6

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395330.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      122182..132914
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474368.2 → XP_021330043.1  E3 ubiquitin-protein ligase RBBP6

      UniProtKB/TrEMBL
      A0A8M9PSP0
    Nucleotide Protein
    Heading Accession and Version

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