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    rpz5 rapunzel 5 [ Danio rerio (zebrafish) ]

    Gene ID: 100003142, updated on 12-Sep-2024

    Summary

    Official Symbol
    rpz5provided by ZNC
    Official Full Name
    rapunzel 5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4678
    See related
    Ensembl:ENSDARG00000075718 AllianceGenome:ZFIN:ZDB-GENE-030131-4678
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd50h12; rapunzel5; wu:fd50h12; zgc:171577
    Orthologs
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    Genomic context

    See rpz5 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (46492988..46496293)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (46526272..46529577)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886607 Neighboring gene rapunzel 6 Neighboring gene protein rapunzel-like Neighboring gene rapunzel 3 Neighboring gene rapunzel 4 Neighboring gene transmembrane protein 176l.1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110124.1NP_001103594.1  rapunzel 5

      See identical proteins and their annotated locations for NP_001103594.1

      Status: PROVISIONAL

      Source sequence(s)
      BC153975
      UniProtKB/TrEMBL
      A8KB57
      Related
      ENSDARP00000096709.4, ENSDART00000105931.5
      Conserved Domains (1) summary
      pfam03938
      Location:54113
      OmpH; Outer membrane protein (OmpH-like)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      46492988..46496293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466571.2XP_021322246.1  rapunzel 5 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PJ33, F1R8L3
      Conserved Domains (1) summary
      pfam03938
      Location:54113
      OmpH; Outer membrane protein (OmpH-like)