U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rdh14b retinol dehydrogenase 14b [ Danio rerio (zebrafish) ]

    Gene ID: 334665, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rdh14bprovided by ZNC
    Official Full Name
    retinol dehydrogenase 14bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6605
    See related
    Ensembl:ENSDARG00000002467 AllianceGenome:ZFIN:ZDB-GENE-030131-6605
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    rdh14; fk47f05; wu:fk47f05; si:dkey-174m14.2
    Summary
    Predicted to enable all-trans-retinol dehydrogenase (NADP+) activity. Predicted to be located in membrane. Orthologous to human RDH14 (retinol dehydrogenase 14). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rdh14b in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9421451..9428018, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9433712..9440279, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene synaptotagmin XIVb Neighboring gene 5'-nucleotidase, cytosolic IB b Neighboring gene si:dkey-174m14.3 Neighboring gene coiled-coil domain-containing protein 106-like Neighboring gene cysteine-rich protein 2-like Neighboring gene RAD51 paralog B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Wang D, et al. Proc Natl Acad Sci U S A, 2007 Jul 24. PMID 17640903, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC153839

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables all-trans-retinol dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    retinol dehydrogenase 14b
    Names
    retinol dehydrogenase 14 (all-trans and 9-cis)
    retinol dehydrogenase 14b (all-trans/9-cis/11-cis)
    NP_001040655.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047190.1 → NP_001040655.1  retinol dehydrogenase 14b

      Status: PROVISIONAL

      Source sequence(s)
      BC095278
      UniProtKB/TrEMBL
      A0A8M1NAK9, Q503L5
      Related
      ENSDARP00000014422.7, ENSDART00000025330.8
      Conserved Domains (2) summary
      PRK06197
      Location:41 → 322
      PRK06197; short chain dehydrogenase; Provisional
      cl21454
      Location:41 → 315
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      9421451..9428018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools