wdr41 WD repeat domain 41 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: wdr41provided by ZNC
Official Full Name: WD repeat domain 41provided by ZNC
Primary source: ZFIN:ZDB-GENE-050706-152
See related: Ensembl:ENSDARG00000009851 AllianceGenome:ZFIN:ZDB-GENE-050706-152
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj48d04; wu:fj48d04; zgc:110041
Summary: Predicted to act upstream of or within regulation of autophagy. Orthologous to human WDR41 (WD repeat domain 41). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (7605803..7630093)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (7868135..7892425)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of autophagy	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: WD repeat-containing protein 41

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001030261.2 → NP_001025432.2 WD repeat-containing protein 41

Status: PROVISIONAL

Source sequence(s)

BC098539, CT679601

UniProtKB/TrEMBL

A0A8M1N7G3, F1Q4U0

Related

ENSDARP00000107806.2, ENSDART00000121813.4

Conserved Domains (3) summary

COG2319
Location:25 → 426

WD40; WD40 repeat [General function prediction only]

sd00039
Location:42 → 80

7WD40; WD40 repeat [structural motif]

cl02567
Location:34 → 344

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007132.7 Reference GRCz11 Primary Assembly

Range

7605803..7630093

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021468895.2 → XP_021324570.1 WD repeat-containing protein 41 isoform X1

UniProtKB/TrEMBL

A0A8M9PU15

Conserved Domains (2) summary

sd00039
Location:46 → 79

7WD40; WD40 repeat [structural motif]

cl25539
Location:16 → 338

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...