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    tex30 testis expressed 30 [ Danio rerio (zebrafish) ]

    Gene ID: 567483, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tex30provided by ZNC
    Official Full Name
    testis expressed 30provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-219
    See related
    Ensembl:ENSDARG00000030636 AllianceGenome:ZFIN:ZDB-GENE-041210-219
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-22a1.2; si:dkey-193n17.4
    Summary
    Orthologous to human TEX30 (testis expressed 30). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tex30 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (27393468..27396427, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (27582722..27585690, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene toll-like receptor 20, tandem duplicate 4 Neighboring gene nucleolus and neural progenitor protein Neighboring gene protein O-glucosyltransferase 2 Neighboring gene syntaxin binding protein 5L

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    testis-expressed sequence 30 protein; testis-expressed protein 30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      27393468..27396427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478957.2 → XP_021334632.1  testis-expressed protein 30 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PSW6, F1Q8A9
      Related
      ENSDARP00000092175.4, ENSDART00000101401.6
      Conserved Domains (1) summary
      cl21494
      Location:34 → 201
      Abhydrolase; alpha/beta hydrolases

    2. XM_021478956.2 → XP_021334631.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PZS8
      Related
      ENSDARP00000119504.1, ENSDART00000136412.2
      Conserved Domains (1) summary
      cl21494
      Location:34 → 212
      Abhydrolase; alpha/beta hydrolases

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394755.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      341485..344444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_690780.9 → XP_695872.3  testis-expressed protein 30 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PSW6, F1Q8A9
      Conserved Domains (1) summary
      cl21494
      Location:34 → 201
      Abhydrolase; alpha/beta hydrolases

    2. XM_021472191.2 → XP_021327866.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PZS8
      Conserved Domains (1) summary
      cl21494
      Location:34 → 212
      Abhydrolase; alpha/beta hydrolases

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395282.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      45404..48364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219270.1 → XP_068075371.1  testis-expressed protein 30 isoform X2

    2. XM_068219272.1 → XP_068075373.1  testis-expressed protein 30 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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