U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    vmac vimentin type intermediate filament associated coiled-coil protein [ Danio rerio (zebrafish) ]

    Gene ID: 570934, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    vmacprovided by ZNC
    Official Full Name
    vimentin type intermediate filament associated coiled-coil proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100427-5
    See related
    Ensembl:ENSDARG00000110997 AllianceGenome:ZFIN:ZDB-GENE-100427-5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human VMAC (vimentin type intermediate filament associated coiled-coil protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See vmac in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (6430824..6444163)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (6420919..6425378)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene neurturin Neighboring gene uncharacterized LOC137496667 Neighboring gene vimentin-type intermediate filament-associated coiled-coil protein-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A11 Neighboring gene uncharacterized LOC137496668 Neighboring gene La ribonucleoprotein 6, translational regulator b Neighboring gene growth arrest and DNA-damage-inducible, beta a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    vimentin-type intermediate filament-associated coiled-coil protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      6430824..6444163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479704.2 → XP_021335379.1  vimentin-type intermediate filament-associated coiled-coil protein

      UniProtKB/TrEMBL
      A0A2R8QC89, A0A8M9QDC1
      Related
      ENSDARP00000151144.1, ENSDART00000190742.1
      Conserved Domains (1) summary
      cl25732
      Location:8 → 100
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.