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    phf5a PHD finger protein 5A [ Danio rerio (zebrafish) ]

    Gene ID: 286774, updated on 9-Dec-2024

    Summary

    Official Symbol
    phf5aprovided by ZNC
    Official Full Name
    PHD finger protein 5Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-021219-3
    See related
    Ensembl:ENSDARG00000045155 AllianceGenome:ZFIN:ZDB-GENE-021219-3
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    chunp6910
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See phf5a in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (19138474..19143678)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (19016600..19021804)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene cold shock domain containing C2, RNA binding a Neighboring gene aconitase 2, mitochondrial Neighboring gene TEF transcription factor, PAR bZIP family member a Neighboring gene zinc finger CCCH-type containing 7Bb

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of U2 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of precatalytic spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    PHD finger-like domain-containing protein 5A
    Names
    un-named hi1373
    unm hi1373

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173266.1NP_775373.1  PHD finger-like domain-containing protein 5A

      See identical proteins and their annotated locations for NP_775373.1

      Status: PROVISIONAL

      Source sequence(s)
      AY099533
      UniProtKB/TrEMBL
      Q6PI44, Q6YMR2
      Related
      ENSDARP00000066396.5, ENSDART00000066397.6
      Conserved Domains (1) summary
      pfam03660
      Location:1104
      PHF5; PHF5-like protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      19138474..19143678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395301.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      363845..367781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)