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    ubfd1 ubiquitin family domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 562437, updated on 9-Dec-2024

    Summary

    Official Symbol
    ubfd1provided by ZNC
    Official Full Name
    ubiquitin family domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050506-90
    See related
    Ensembl:ENSDARG00000102827 AllianceGenome:ZFIN:ZDB-GENE-050506-90
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:6905175; zgc:162578
    Summary
    Orthologous to human UBFD1 (ubiquitin family domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ubfd1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (43941975..43954946, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (43239900..43254054, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene mesothelin a Neighboring gene uncharacterized LOC137490197 Neighboring gene uncharacterized LOC137490740 Neighboring gene UNC93-like protein MFSD11 Neighboring gene interleukin 4 receptor, tandem duplicate 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC162578

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ubiquitin domain-containing protein UBFD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082830.1NP_001076299.1  ubiquitin domain-containing protein UBFD1

      See identical proteins and their annotated locations for NP_001076299.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134031
      UniProtKB/TrEMBL
      A0A8M1NC20, A3KNV8
      Related
      ENSDARP00000137446.1, ENSDART00000167159.2
      Conserved Domains (2) summary
      smart00213
      Location:56125
      UBQ; Ubiquitin homologues
      pfam00240
      Location:59126
      ubiquitin; Ubiquitin family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      43941975..43954946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164210.5XP_005164267.1  ubiquitin domain-containing protein UBFD1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BBI1
      Conserved Domains (2) summary
      smart00213
      Location:67136
      UBQ; Ubiquitin homologues
      pfam00240
      Location:70137
      ubiquitin; Ubiquitin family