U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    dnaja3a DnaJ heat shock protein family (Hsp40) member A3a [ Danio rerio (zebrafish) ]

    Gene ID: 335894, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    dnaja3aprovided by ZNC
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member A3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7837
    See related
    Ensembl:ENSDARG00000058494 AllianceGenome:ZFIN:ZDB-GENE-030131-7837
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fj36c02
    Summary
    Predicted to enable protein kinase binding activity. Predicted to be involved in mitochondrion organization. Predicted to act upstream of or within protein folding and response to heat. Predicted to be active in mitochondrion. Orthologous to human DNAJA3 (DnaJ heat shock protein family (Hsp40) member A3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See dnaja3a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (11926070..11947672)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (11985831..12007472)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene forkhead box K2b Neighboring gene coronin-7-like Neighboring gene heme oxygenase 2b Neighboring gene cilia and flagella associated protein 70

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Selection of reliable biomarkers from PCR array analyses using relative distance computational model: methodology and proof-of-concept study. Liu C, et al. PLoS One, 2013. PMID 24349563, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables heat shock protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to heat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DnaJ heat shock protein family (Hsp40) member A3a; dnaJ heat shock protein family (Hsp40) member A3a
    Names
    DnaJ (Hsp40) homolog, subfamily A, member 3A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201313.1 → NP_958470.1  DnaJ heat shock protein family (Hsp40) member A3a

      See identical proteins and their annotated locations for NP_958470.1

      Status: PROVISIONAL

      Source sequence(s)
      BC047809
      UniProtKB/TrEMBL
      B2GT20, Q7ZUW0
      Related
      ENSDARP00000075810.4, ENSDART00000081367.5
      Conserved Domains (4) summary
      cd10719
      Location:236 → 296
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40
      cd10747
      Location:207 → 416
      DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
      COG0484
      Location:89 → 435
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:91 → 153
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      11926070..11947672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168471.5 → XP_005168528.1  dnaJ heat shock protein family (Hsp40) member A3a isoform X1

      UniProtKB/TrEMBL
      A0A8M2BFS1
      Conserved Domains (4) summary
      cd10719
      Location:236 → 296
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40
      cd10747
      Location:207 → 416
      DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
      COG0484
      Location:89 → 474
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:91 → 153
      DnaJ; DnaJ domain

    RNA

    1. XR_011007989.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394520.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      59528..81094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools