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    si:ch211-107m4.1 si:ch211-107m4.1 [ Danio rerio (zebrafish) ]

    Gene ID: 569278, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-107m4.1provided by ZNC
    Official Full Name
    si:ch211-107m4.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081107-3
    See related
    Ensembl:ENSDARG00000056830 AllianceGenome:ZFIN:ZDB-GENE-081107-3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human HNRNPUL2 (heterogeneous nuclear ribonucleoprotein U like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-107m4.1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (22480351..22495630, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (22183934..22198513, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 9 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 22 Neighboring gene SMYD family member 5 Neighboring gene uncharacterized LOC137487584

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein U-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      22480351..22495630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692655.10 → XP_697747.4  heterogeneous nuclear ribonucleoprotein U-like protein 2

      UniProtKB/TrEMBL
      A0A8N7TEL1, E9QBM3
      Related
      ENSDARP00000119095.2, ENSDART00000137167.4
      Conserved Domains (3) summary
      pfam02037
      Location:6 → 40
      SAP; SAP domain
      pfam13671
      Location:454 → 593
      AAA_33; AAA domain
      cd12884
      Location:242 → 414
      SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1
    Nucleotide Protein
    Heading Accession and Version

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